Open Reading Frames (ORFs) and annotations from the paired-end transcriptome outputs of Savalia savaglia's RNASeq data

This dataset contains Open Reading Frames (ORFs) and annotations obtained from the paired-end transcriptome outputs of Savalia savaglia's RNASeq data. The dataset includes the following files:

From TransDecoder analyses:

• Assembly_Ss_PE.Trinity.fasta.transdecoder.cds: Nucleotide sequences for coding regions of the final candidate ORFs, obtained with TransDecoder from paired-end transcriptome outputs of Savalia savaglia's RNA-Seq.

• Assembly_Ss_PE.Trinity.fasta.transdecoder.gff3: Positions within the target transcripts of the final selected ORFs, obtained with TransDecoder from paired-end transcriptome outputs of Savalia savaglia's RNA-Seq.

• Assembly_Ss_PE.Trinity.fasta.transdecoder.pep: Peptide sequences for the final candidate ORFs, obtained with TransDecoder from paired-end transcriptome outputs of Savalia savaglia's RNA-Seq.

• Assembly_Ss_PE.Trinity.fasta.transdecoder.bed: BED-formatted file describing ORF positions, suitable for viewing using GenomeView or IGV, obtained from paired-end transcriptome outputs of Savalia savaglia's RNA-Seq data.

• blastp.outfmt6.w_pct_hit_length: File providing percentages of hit lengths from BLASTp results of the paired-end de novo assembly of Savalia savaglia. It includes the top hit's length and the percentage of the length covered in the alignment.

• pfam.domtblout: PFAM domain annotations for the predicted proteins in the paired-end de novo assembly of Savalia savaglia.

From Trinotate analyses:

• myTrinotate_PE_Ss.tsv: Comprehensive annotation file with results from Trinotate, including protein domain identification and other annotations from the paired-end de novo assembly of Savalia savaglia.

• Trinotate_PE_Ss_report.cXp_summary.html: HTML report summarizing the annotation results from Trinotate, providing an overview of the functional annotations and transcript features of the paired-end de novo assembly of Savalia savaglia.