raw_mapped_bam_from_Galaxy
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下载链接：
https://figshare.com/articles/dataset/raw_mapped_bam_from_Galaxy/14214131
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资源简介：
Mapped reads (BAM files) on the UA159 genome. Data published in Werlang et. al. Nature Microbiology 2021https://doi.org/10.1038/s41564-021-00876-1
Generated using Galaxy: usegalaxy.org
Steps used to generate the files from raw sequencing data. This represents Step 0 of the full analysis pipeline available at https://github.com/cwerlang/Smutans-MUC5B-RNASeq
0. The raw bam files are available from the Gene Expression Omnibus under accession number GSE163258
1. Load the 'data/external/GCF_000007465.2_ASM746v2_genomic.fna' file and raw bam files into Galaxy2. Map with BWA (Burrows-Wheeler Aligner). Options: unpaired single end short reads3. Download the .bam files into the "raw_mapped_bam_from_Galaxy" folder4. Rename the files to 'xxxx.mapped.bam'5. Fill in the 'data/raw_mapped_bam_from_Galaxy/file_list_mapped_bam.csv' file with the new filenames
创建时间：
2021-03-14
