RADseq data and ACD6 genotype for Costa Brava accessions
收藏DataONE2014-07-11 更新2024-06-27 收录
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Genotypic information obtained by RADseq for 1688 accessions collected in the Costa Brava region of Spain in Spring 2012. Reads were processed with SHORE (ver. 0.9) and mapped to the reference sequence, Col-0, with BWA, using the default parameters and allowing 5% mismatches. All mapped reads were converted into BAM format by Samtools (ver. 0.1.18) for further analysis. Single nucleotide polymorphism (SNP) genotypes were generated using the subprogram UnifiedGenotyper implemented in GATK (ver. 2.3-6). The genotype at the ACD6 locus is reported for each individual as well, as determined by direct Sanger sequencing of the transmembrane domain of ACD6.
创建时间：
2014-07-11
