Additional file 2 of Transipedia.org: k-mer-based exploration of large RNA sequencing datasets and application to cancer data

Additional file 2: Supplementary tables. Table S1. 61-nt mutation probes. Table S2. Effect of unicity and low complexity masking on mutation and fusion calls. Table S3. List of the 911 False positive mutations calls. Table S4. Subset of 78 putative false positive mutations reanalysed with CRAC or countTags. Table S5. Subset of 44 putative FP mutations analyzed at the DNA level by WES data. Table S6. 51-nt fusion probes. Table S7. CCLE cell lines with high countsof SF3B1-related neojunctions. Table S8. Results of cross-cohort queries. Table S9. RNA-seq datasets used in study. Table S10. List of cancer genes used for mutation detection.