MIP_segments_bash
收藏Figshare2021-07-07 更新2026-04-08 收录
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https://figshare.com/articles/dataset/MIP_segments_bash/14839725
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资源简介：
Input data and bash scripts to create coordinates of segments on reference sequences.<br>Usage:1. decompres and untar .gz files2. run get_ind_cov.sh - produces coverage files for each species2. run segments_on_MIPs.sh - produces for each species .bed file with coordinates on segments on MIPs. This file is used as input to R script R_microhaplotypes.R<br>Files:- references.tar.gz - reference sequences for each species; introns are indicated with N runs- MIPnumber_min20cov.txt.gz - .bed file with coordinates of each MIP in each species on reference- MIP_beds.tar.gz - .bed files for each species containing coordinates of MIPs on references (were generated from MIPnumber_min20cov.txt)- MIPcoverage_Ind.txt.gz - per MIP per individual coevareg for each individual and species<br>- vcfs.tar.gz - per MIP per species .vcf files<br><br><br>
提供机构：
Babik, Wieslaw
创建时间：
2021-07-07
