Systematic dissection of tumor-normal ecosystems at single-cell resolution across a thousand tumors of 30 cancer types

This is the collection of codes and datasets described in the paper "Systematic dissection of tumor-normal ecosystems at single-cell resolution across a thousand tumors of 30 cancer types"<br>This repository contains:The annotated NMF, scRNA-seq, and Spatial matrix in h5ad formatAnalysis codes used for analysisDocumentation providing information on the analyzed datasets of both single-cell and spatial transcriptomes.<br>The descriptions for each item are as follows:Raw count scRNA-seq matrix files for each dataset after QC: 'atlas_dataset.tar'Spatial matrix files for each dataset: 'spatial_dataset.tar'NMF module matrix files for each cell type: 'NMF_h5ad.tar'Analysis codes: 'analysis_codes.tar' and 'scjp.tar'