OpenSMFS Test Data

Repository for test data sets

A basic description of each new data set should be given. These are intended to be used as test files for conversion and testing software suites.

New versions should never change files, only add.

When a new file is added, the description should be updated adding a description of the new file.

HDF5 Files

12d_New_30p_320mW_steer_3.hdf5 8 spot FRET single cw laser measurement (1 dsDNA construct)

 0023uLRpitc_NTP_20dT_0.5GndCl.hdf5 usALEX test measurement, with dynamics (Partially hybridized 20dT DNA oligo doubly labeled with Cy3B and Atto647N)

dsdna_d7_d17_50_50_1.hdf5 PIE test data, 2 static populations (2 double stranded DNA constructs 

HP3_TE150_SPC630.hdf5 PIE test data within burst dynamics (150mM NaCL 3nt DNA hairpin)

HP3_TE200_SPC630.hdf5 PIE test data within burst dynamics (200mM NaCL 3nt DNA hairpin)

HP3_TE250_SPC630.hdf5 PIE test data within burst dynamics (250mM NaCL 3nt DNA hairpin)

HP3_TE300_SPC630.hdf5 PIE test data within burst dynamics (300mM NaCL 3nt DNA hairpin)

SM files

 0023uLRpitc_NTP_20dT_0.5GndCl.sm SM file usALEX test file

022rde11_T_minus15_acc__NT_plus10_don_1.sm SM file usALEX test file

PicoQuant files

PTU files

161128_DM1_50pM_pH74.ptu record format: rtHydraHarp2T3 test file

20161027_DM1_1nM_pH7_20MHz1.ptu record format: rtHydraHarp2T3 test file

Cy3+Cy5_diff_PIE-FRET.ptu record format: rtPicoHarpT3 test file

TestFile_2.ptu record format: rtHydraHarpT3 test file

trace_T2_300s_1_coincidence.ptu record format: rtTimeHarp260PT2 test file

RawData.ptu record format: rtGenericT3 test file

Old formats files

nanodiamant_histo.phu PHU histogram file

Pre.ht3 HT3 records file

topfluorPE_2_1_1_1.pt3 PT3 records file, single excitation

DNA_FRET_0.5nM.pt3 PT3 recoreds file, PIE/nsALEX excitation

Point_11_s23d9A15_70_25sucrose_55_25.t3r Example t3r format file

Beckr&Hickl files

test_noise.spc SPC 150 format noise data, main file

test_noise.set SPC 150 settings file

test_noise.set SPC 150 file converted to ascii format for comparison

dsdna_d7d17_50_50_1.spc SPC 630 format test file, 2 static dsDNA constructs

dsdna_d7d17_50_50_1.set SPC 630 format settings test file, 2 static dsDNA constructs

sample_c10.spc SPC QC004 file 2 ex 3 em data

sample_c10.set SPC QC004 file 2 ex 3em settings file