Top 1% Bayenv2.0 SNPs allele coverage counts
收藏DataONE2017-03-03 更新2024-06-26 收录
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资源简介：
We provide here the Sync file of allele coverage counts for the top 1% (Z score) Bayenv2.0 SNPs.
Used populations and abbreviations:
1 => Population 1, 176 m a.s.l.
2 => Population 2, 297 m a.s.l.
3 => Population 3, 588 m a.s.l.
4 => Population 4, 842 m a.s.l.
5 => Population 5, 1,125 m a.s.l.
6 => Population 6, 1,303 m a.s.l.
Output of the Sync file (for format specification see Kofler et al., PoPoolation2: identifying differentiation between populations using sequencing of pooled DNA samples (Pool-Seq). Bioinformatics 2011;27:3435-3436):
col1: scaffold number
col2: SNP position on scaffold
col3: reference character
col4: allele frequencies of population number 1
col5: allele frequencies of population number 2
coln: allele frequencies of population number n
The allele frequencies are in the format A:T:C:G:N:del, i.e: count of bases 'A', count of bases 'T', etc. , and deletion count in the end.
创建时间：
2017-03-03
