Core-genome phylogeny of 40 Agrobacterium spp.
收藏DataCite Commons2022-02-02 更新2024-07-28 收录
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https://figshare.com/articles/dataset/Core-genome_phylogeny_of_40_Agrobacterium_spp_/14792178/1
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A phylogenomic database was built with the Pantagruel pipeline [29], using the ‘usingGeneRax’ branch of the code (https://github.com/flass/pantagruel/tree/usingGeneRax). The following pipeline tasks were performed: init, 00-03 and 05, leading to the clustering of homologous gene families with MMSeqs2,the alignment of their nucleotide sequences with ClustalOmega, and the computation of a maximum-likelihood (ML) phylogenetic tree with RAxML 8.1.2 based on the concatenation of 1,089 core-genome gene alignments
提供机构：
figshare
创建时间：
2021-09-29
