Additional file 1: of Signatures of host specialization and a recent transposable element burst in the dynamic one-speed genome of the fungal barley powdery mildew pathogen

Table S1. BUSCO genome completeness analysis. Table S2. Scaffolds with telomeric repeats at their ends in the DH14 and RACE1 assembly. Table S3. Assosiation table for old and new Bgh gene model IDs. Table S4. Manually currated orthology relationships between RACE1 and DH14. Table S5. Isolate-specific genes in DH14 and RACE1. Table S6. Isolate-specific gene expression in DH14 and RACE1. Table S7. Clustering of secreted protein coding genes in the Bgh DH14 genome. Table S8. MCScanX analysis for the identification of duplicate genes. Table S9. Functional domains of dispersed duplicate genes in Sclerotinia sclerotiorum. Table S10. Secreted/Non-secreted duplications in the Bgh DH14 genome. Table S12. Raw read count for the top 20 expressing transposable elements in pooled 16Â h & 48Â h dpi DH14 RNA-seq dataset. Table S13. All datasets used for analyses in this study. Table S14. BUSCO analysis for the forma specialis genomes used for orthology calling between the CSEPs. (XLSX 1151Â kb)