Design and functional characterization of Salmo salar TLR5 agonist peptides derived from High Mobility Group B1 acidic tail.

Based on the structural knowledge of TLR5 surface  using blind docking platforms, a series of peptides derived from HMGB1 truncated acidic tail from Salmo salar were designed TLR5 agonistic. Also, a template peptide with the wild type C-terminal acidic tail sequence as reference was included (SsOri).  Peptides binding poses complexed on TLR5 ectodomain models were filtrated each based in the docking scoring functions and predeicted theoretical binding affinity of complex.