Additional file 1 of Epigenome-wide analysis of T-cell large granular lymphocytic leukemia identifies BCL11B as a potential biomarker

Additional file 1: Table S1. T-LGL patient data. Table S2. Benign samples. Table S3. Sample overview. Table S4. Primer sequences and CpGs used in pyrosequencing. Table S5. CpGs validated by pyrosequencing. Table S6. Pearson correlation of results of bisulfite sequencing and methylation array data. Table S7. Chromatin states—description. Table S8. Taqman probes used in qPCR. Table S9. Differentially methylated probes and genomic features. Table S10. Differentially hypermethylated genes. Table S11. Differentially hypomethylated genes. Table S12. Differentially methylated regions. Table S13. Gene ontology analysis for TSS200 or 5’UTR of hypermethylated genes identified in Table S10. Table S14. Gene ontology analysis for TSS200 or 5’UTR of hypomethylated genes identified in Table S11. Table S15. Gene ontology analysis for enhancers of hypermethylated genes identified in Table S10. Table S16. Gene ontology analysis for enhancers of hypomethylated genes identified in Table S11. Table S17. Chromatin states. Table S18. Pyrosequencing—raw data. Table S19. Sequential Samples—raw data.