An amplicon panel for high-throughput and low-cost genotyping of Pacific oyster

<b>Data inputs</b> for the manuscript "An amplicon panel for high-throughput and low-cost genotyping of Pacific oyster <i>Crassostrea gigas</i>". Includes:<b>Data from Sutherland et al. 2020</b>, not originally uploaded and uploaded with permission from primary author:- populations_single_snp_HWE.raw (plink format, single-SNP per locus filtered output from Stacks populations module)- populations.snps.vcf (as above, but VCF format)<b>New data</b>, multilocus genotypes from the pilot study from the present analysis:- R_2022_08_04_S5XL.xls (initial run samples using Cgig_v.1.0 amplicon panel)- R_2022_10_07_S5XL.xls (second run using Cgig_v.1.0 amplicon panel)- my_data_ind-to-pop_annot (tab-delim text file interp of populations; note: samples 1601-1608 are cultured samples from China, not wild samples, and this is dealt with in the analysis script)- selected_mnames.csv (tab-delim text file that outlines each marker name and the reason it was included in the design)- GBMF_pilot_sample_ID_barcode_run_from_variantCaller_output_2023-07-27.xlsx (Excel file showing run name, barcode ID, and sample ID for the pilot study)<b>New data</b>, multilocus genotypes from the Oregon State University (OSU) Molluscan Broodstock Program (MBP):- R_2023_07_26_12_44_23_user_GSS5PR-0268-78-Ampseq_Oyster_20230725.xls (OSU CHR8 samples using Cgig_v.1.0 amplicon panel)- my_data_ind-to-pop_annot_OSU_MBP.txt (population map, will need to rename as my_data_ind-to-pop_annot.txt to match requirement in scripts).