Supplementary Data S1–S8: Gene lists and RNA-seq metadata for mitochondrial and hypoxia analysis.

Supplementary Data S1-S8 of the manuscript "Hypoxia leads to reduced mito-nuclear gene expression and to increased mtDNA transcriptional pausing in human cells" by Shtolz et al.This Excel file contains eight supplementary tables supporting the study analysis (individual sheets):Supplementary Data S1: Publicly available RNA-seq data used in the study, including accession numbers and experimental conditions.Supplementary Data S2: List of hypoxia markers.Supplementary Data S3: Inventory of nDNA- and mtDNA-encoded OXPHOS structural genes.Supplementary Data S4: Inventory of nDNA- and mtDNA-encoded mito-ribosome genes.Supplementary Data S5: List of excluded RNA-seq experiments (U87 cells).Supplementary Data S6: nDNA-encoded mitochondrial genes with promoter-proximal HIFα binding sites responsive to hypoxia.Supplementary Data S7: Reference list of human Transcription Factors (Lambert et al., 2018).Supplementary Data S8: Custom list of potential and confirmed mitochondrial regulators (modified from Arroyo et al., 2016).