Supplementary Data associated with the paper "cogeqc: an R/Bioconductor package for quality checks in comparative genomics"

Overview
This dataset is associated with the paper "cogeqc: an R/Bioconductor package for quality checks in comparaitve genomics". Included files are:

File description
- brassicaceae_proteomes.rda: an R object containing the whole-genome protein sequences of 25 Brassicaceae species. Only translated sequences from primary transcripts were included. Data are represented as a list of AAStringSet objects.

- Orthogroups_*.tsv: Orthogroups inferred with OrthoFinder using the sequences in brassicaceae_proteomes.rda. The strings "default" and "ultra" in filenames indicate the DIAMOND sensitivity mode that was used, and numbers (1, 1_5, 2, and 3) indicate the mcl inflation parameter.