Additional file 1 of Influence of genetics and the pre-vaccination blood transcriptome on the variability of antibody levels after vaccination against Mycoplasma hyopneumoniae in pigs

Additional file 1: Table S1. Individual data and metadata. Table S2. Descriptive statistics of the groups of animals with contrasted Ab response to vaccination against M. hyo at different days post-vaccination (dpv) within the total population and the subset for which RNASeq data are available. Table S3. Effects of sex, batch, age at weaning and litter on M. hyo Ab levels. Table S4. Correlations of Ab responses to M. hyo vaccination at different days post-vaccination (dpv). Table S5. Effects of sex, batch, age at weaning, BW at 0 dpv, vaccination and litter on BW at 40 and 118 dpv and ADG from 0 to 40 and 40 to 118 dpv. Table S6. Genetic parameters of Ab responses to M. hyo vaccination at different days post-vaccination (dpv). Table S7. Suggestive (FDR < 0.1) and significant (FDR < 0.05) SNPs associated with the early M. hyo Ab levels at 21 dpv (sera diluted 1/4). Table S8. FSEA of transcript overlap between WGCNA modules and BTM. Table S9. FSEA of differentially expressed genes between groups of animals with contrasted Ab responses to M. hyo vaccination. Table S10. Determination of the number of genes (maximum 25) necessary to reach an optimized prediction of extreme Ab responders to M. hyo vaccination by sPLS-DA. Table S11. Contribution to the sPLS-DA analysis of the different phenotypes of the set of 101 genes predictive of extreme Ab responders to M. hyo vaccination. Table S12. PLS-DA with the set of 101 genes predictive of extreme Ab responders to M. hyo vaccination.