Extracting gene markers associated to subpopulation of single cells

The exemplary dataset RNA-5c includes the human lung adenocarcinoma cell lines A549, H1975, H2228, H838, and HCC827. It is derived from GEO repository ID: GSM3618014. The count table is associated with cell names and cell lines, e.g. Lib90_00000.HCC827, Lib90_00002.H838. RNA-5c includes 1242 cells of A549, 436 cells belong to H1975, 749 cells of H2228, 879 cells belong to H838, and 598 cells of HCC827 cells. The exemplary dataset 390c_wctype refers to the sample 390c and, in the counts table, cell names include the cell type assignment, i.e TGACTAGGTTCCACAA.Treg. This dataset is part of 41,650 cells isolated from the caecum, transverse colon and sigmoid colon of 5 individuals, which is one of the datasets constituting the immune-gut atlas transcriptome.