Genome assembly, repeat annotation, and gene models for Wahlenbergia ceracea
收藏DataCite Commons2026-02-17 更新2025-01-06 收录
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https://figshare.com/articles/dataset/Supplementary_Data_of_Wahlenbergia_ceracea_genome_assembly_from_Notarnicola_et_al_2024/27890484
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Supplementary data files including genome assembly, repeat annotations (RepeatModeler), and gene models (BRAKER2) for Wahlenbergia ceracea.<b>Description of files</b>Genome assembly<i>wceracea_genome.fa</i>: Raw genome assembly in FASTA format.<i>wceracea_genome_filtered.fa</i>: Genome assembly in FASTA format with junk contigs and alternative haplotigs removed.<i>wceracea_genome_filtered_norepeat.fa</i>: Genome assembly in FASTA format with junk contigs, alternative haplotigs, and repeat-rich contigs removed.Repeat Annotation (RepeatModeler and RepeatMasker)wceracea_genome_filtered.fa.cat.gz: Concatenated alignment file for identified repeats.wceracea_genome_filtered.repeat.out.fa: Repeat annotation file.wceracea_genome_filtered.masked.fa: Soft-masked genome assembly (junk contigs and alternative haplotigs removed).Gene Models (BRAKER)<i>braker_wceracea.sorted.gtf</i>: BRAKER gene predictions in GTF format, sorted by genomic coordinates.<i>braker_wceracea.codingseq</i>: Coding sequences of BRAKER-predicted genes in FASTA format.<i>braker_wceracea.aa</i>: Protein sequences for BRAKER-predicted genes in FASTA format.Kallisto resources<i>braker_wceracea.sorted.kallisto.idx</i>: Kallisto index generated from BRAKER gene models for transcript quantification.<i>import_kallisto_tximport.r</i>: R script for importing transcript and gene abundances using tximport.<br>
提供机构:
figshare
创建时间:
2024-12-18



