Refined Coordinate Structures and Pocket Analyses for Renal Pathologies and Viral Entry Glycoproteins

Dataset Title: Refined Coordinate Structures and Pocket Analyses for Renal Pathologies and Viral Entry Glycoproteins Overview: Focuses on viral entry mechanisms and renal membrane proteins (e.g., ACE2, PKD1/2, Dengue-E, Ebola-GP, HCV-E2, HIV-1-gp120). The coordinate models map open, active binding configurations of envelope glycoproteins, providing targets for entry-inhibiting drug design. Computational Methodology: Target structures are optimized using the NRC CASP-17 Pure Math Folding Engine. This pipeline applies C-alpha harmonic guide potential constraints ($k_{guide} = 0.5$) for comparative modeling (or $k_{guide} = 0.0$ for ab-initio modeling), followed by sidechain relaxation and pocket expansion simulations to identify allosteric and active cavities. All coordinates are audited using the Trageser Tensor Theorem (TTT-7) lattice-parity verification to eliminate steric clashes (minimum inter-atomic distance > 1.10 Å) and loop hallucinations. License: Distributed under Creative Commons Attribution 4.0 International (CC BY 4.0) to enable open, commercial, and academic therapeutic drug design. Principal Investigator: James Paul Trageser Affiliation: Nexus Resonance Codex ORCID: 0009-0006-6678-2908 X (Twitter): @jtrag Repository: https://GitHub.com/Nexus-Resonance-Codex/Drug-Discovery