Chara,AUS WGS vs IWGSC RefSeq v1.0 Genome Assembly
收藏adelaide.figshare.com2023-05-31 更新2025-03-22 收录
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https://adelaide.figshare.com/articles/dataset/Chara_AUS_WGS_vs_IWGSC_RefSeq_v1_0_Genome_Assembly/5848356/2
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WGS reads of Chara,AUS (http://dx.doi.org/10.1111/j.1467-7652.2012.00717.x) were aligned against the IWGSC Triticum aestivum Chinese Spring RefSeq v1.0 genome assembly using Minimap2. These BAM files (.bam) and index files (.bam.bai) are provided together with a summary of read alignment coverage bigWig files (.bam.bw). SNP variants were called from these BAM files to generate VCF files (.bam.vcf.gz) and index files (.bam.vcf.gz.tbi) and are provided together with a summary of SNP density (SNPs per 10 kbp) bigWig files (.bam.vcf.w10000_s10000.bw). VCF files contain the following filter values and corresponding meaning: PASS = high quality (Q>=30) homozygous; Het = high quality (Q>=30) heterozygous; LowQualHom = low quality (Q
Chara,AUS的WGS读数（http://dx.doi.org/10.1111/j.1467-7652.2012.00717.x）已利用Minimap2对IWGSC Triticum aestivum Chinese Spring RefSeq v1.0基因组组装进行比对。本数据集包含相应的BAM文件（.bam）和索引文件（.bam.bai），以及读数比对覆盖情况的bigWig文件（.bam.bw）。通过对BAM文件中的SNP变异进行检测，生成了VCF文件（.bam.vcf.gz）及其索引文件（.bam.vcf.gz.tbi），并提供了SNP密度（每10 kbp的SNPs数量）的bigWig文件（.bam.vcf.w10000_s10000.bw）。VCF文件中包含以下过滤值及其对应意义：PASS = 高质量（Q>=30）纯合子；Het = 高质量（Q>=30）杂合子；LowQualHom = 低质量（Q
提供机构：
The University of Adelaide
