A phylogenomic framework of Gastrotricha evolutionary relationships

This repository contains data related to "A Phylogenomic Framework of Gastrotricha Evolutionary Relationships".The compressed file genome_dataset.tar.gz contains newly-sequenced genome assemblies of 28 gastrotrichs, after removal of contaminanted contigs. Each genome has been assembled using SPAdes, while non-metazoans contigs have been removed using Blobtools. See Methods and Materials for complete details. Each assembly is named as follows: [Species_name]_assembly.fasta.The compressed file busco_dataset.tar.gz contains BUSCO sequences obtained from 32 species (28 new genomes, 2 genomes downloaded from NCBI, and 2 transcriptomes) using the Metazoa odb10 database. See Methods and Materials for complete details.The folders M80/ (M80.tar.gz) and M90/ (M90.tar.gz) contain BUSCO sequences obtained with completeness thresholds of 80% and 90%, respectively. Each folder has two subfolders and two files:busco_alignments/ contains the raw BUSCO outputs (single-copy, duplicated, and fragmented sequences).clean_alignments/ contains the single-copy sequences after removal of specific genes and sites according to the "loci filtering" procedure described in Methods and Materials.concatenated.out is the final concatenated alingments from sequences in clean_alignments/.partitions.txt is the partitioning file