Additional file 1 of A comprehensive lettuce variation map reveals the impact of structural variations in agronomic traits

Additional file 1: Supplementary Table 1. Variation statistics in each Lactuca accession. Supplementary Table 2. Summary of the structural variants and affected gene numbers. Supplementary Table 3. Summary of the structural variants and affected gene numbers in L. sativa and L. serriola with significant allele frequency differences. Supplementary Table 4. Enrichment of GO germ in the genes affected by L. sativa-predominant SVs. Supplementary Table 5. Enrichment of KEGG pathways in the genes affected by L. sativa-predominant SVs. Supplementary Table 6. Number of unique SVs in different geographic groups. Supplementary Table 7. Enrichment of KEGG pathways in the genes overlapping with SVs with significant allele frequency differences in different geographic group. Supplementary Table 8. Genomic regions associated with agronomic traits in the lettuce genome. Supplementary Table 9. Candidate genes associated with seed coat color. Supplementary Table 10. A total of 229 manually curated SVs using the Integrative Genomics Viewer (IGV) software to produce a reference set. Supplementary Table 11. Agronomic traits of 133 L. sativa accessions used for genome-wide association analyses.