Supplementary Data for Hynes et al. (2016)

This data set contains sequences, sequence alignments and phylogenetic trees used in the bioinformatic analyses presented in:<br><pre>Hynes AP, Shakya M, Mercer RG, Grüll MP, Bown L, Davidson F, Steffen E, Matchem H, Peach ME, Berger T, Grebe K, Zhaxybayeva O, Lang AS. <i>Functional and Evolutionary Characterization of a Gene Transfer Agent's Multilocus "Genome".</i> Mol Biol Evol. <b>2016</b> Oct;<b>33(10)</b>:2530-43. Epub 2016 Jun 24.<br><br>doi: 10.1093/molbev/msw125. PubMed PMID: 27343288; <br>PubMed Central PMCID: PMC5026251.<br><br>The contents of four files:<br><br>1) <b>32core_genes.zip</b>: amino acid sequences of 32 gene families (in FASTA format) that were used to reconstruct Rhodobacterales phylogeny (shown in Figure 6 in the article.)<br>2) <b>rcc00171_tree.zip</b>: alignment (in FASTA format) and tree file (in NEWICK format) for the tree shown in Figure 7B.<br>3) <b>gtaNphage_teeNafa.zip</b>: alignments (in FASTA format) and tree files (in NEWICK format) for all RcGTA genes and their phage homologs (trees are shown in Figures 7A and S2.)<br>4) <b>RcGTA.zip</b>: amino acid sequences of genes in the RcGTA genome. These are also available in GenBank.<br></pre>