Additional file 2: of Staphylococci phages display vast genomic diversity and evolutionary relationships

Phams. The dataset includes 205 staphylococcal phages, encoding 20,579 predicted ORFs, a total of 2139 phams (gene with related sequences) of which 745 orphams (genes without related sequences) were identified generated based on kclust alignments performed in Phamerator. Phams are ordered by highest conservation among phage members. The phage-ORF column reflects the positioning of genes locus of the genome map generated by Phamerator. Biopython functions were used to retrieved and list in a table with several features associated to the phages. * An alternative nomenclature system for Cluster B phage integrases is provided as in Goerke et al. 2009 (29). (XLSX 216 kb)