Little Penguin (Eudyptula minor) RADseq illumina sequencing RAW output

PEN_C5N7WANXX_s_7_fastq.txt.gz - compressed RAW read data from illumina Hiseq 2000 generated from a RADseq library digested with Pst1 and Msp1 and sequenced with SE 100bp reads.PEN_key.txt - contains metadata associated with the RAW data. This is a list of samples including one blank and four duplicate samples which were included in the sequencing. It also includes the unique library barcode for each sample and the location of the sample on the sequencing plate. For other sample related metadata see Supplementary material 1 from publication.PEN_SNPcallingOUTPUT.zip - Remaining folders and files containing other output associated with SNP calling using the UNEAK Tassel pipeline version 3.0.169. SNP calling was performed using a default error rate, a minor allele frequency cut-off of > 0.05 and a minimum call rate of 80% (Supplementary material S2). Inferred loci with a read depth of