Additional file 2: of Usability of reference-free transcriptome assemblies for detection of differential expression: a case study on Aethionema arabicum dimorphic seeds

Gene coverage calculation (Table S1), reciprocal best BLAST paring (Table S2), full annotation and RPKM tables for the genome method (Table S3) and transcriptome method (Table S4). Comparison of abundance of transcripts (genome method vs. transcriptome method) belonging to: the 5584 GO terms shared between both methods (Table S5); or the 1663 overlapping GO terms of the DEG sets (Table S6). Table S7 shows a summary of significantly under- and over-represented GO terms associated with DEG lists. Table S9 contains a list of primers used for qRT-PCR. (XLSX 10033 kb)