Additional file 1 of Bacteria colonization and gene expression related to immune function in colon mucosa is associated with growth in neonatal calves regardless of live yeast supplementation

Additional file 1: Table S1. Primer sequences for bacterial targets in biopsy samples; Table S2. Relative abundance of bacteria in the colon mucosa of each calf and d at the phylum level; Table S3. Relative abundance of bacteria in the colon mucosa of each calf and d at the genus level; Table S4. List of raw reads of the expressed gene in each calf; Table S5. List of commonly expressed genes among D0 CON, D0 SCB, D5 CON, and D5 SCB; Table S6. List of uniquely expressed genes in D0 CON; Table S7. List of uniquely expressed genes in D0 SCB; Table S8. List of uniquely expressed genes in D5 CON; Table S9. List of uniquely expressed genes in D5 SCB; Table S10. List of DE genes between D0 and D5; Table S11. List of genes in gene modules which correlated with absolute abundance of colon mucosa-attached bacteria.