Datasets and additional data used in the paper: Michela Quadrini, Emanuela Merelli, and Luca Tesei (2025). “Abstractions for RNA Secondary Structure Analysis.”

Name: Datasets and additional data used in the paper: Michela Quadrini, Emanuela Merelli, and Luca Tesei (2025). “Abstractions for RNA Secondary Structure Analysis.”
Creator: Merelli, Emanuela; Tesei, Luca; Quadrini, Michela
Published: 2025-10-22 00:00:00
License: 暂无描述

Figshare2025-10-22 更新2026-04-08 收录

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Datasets and Additional DataThis repository contains the datasets and additional data used in the paper:Michela Quadrini, Emanuela Merelli, and Luca Tesei (2025). “Abstractions for RNA Secondary Structure Analysis.”Folder: 5S_Ribosomal_RNAThis folder contains the data used for the experiment on 264 5S ribosomal RNA (5S rRNA) molecules from the CRW2 database.Subfolder Molecules_DBN/ Contains the secondary structures of the 264 RNAs in dot-bracket notation.Subfolder Molecules_Abstractions_DBN/Shape/ Contains the computed Shape abstractions and a text file with the counts of different shapes.Subfolder Molecules_Abstractions_DBN/Core/ Contains the computed Core abstractions and a text file with the counts of different cores.Subfolder Molecules_Abstractions_DBN/Core_Plus/ Contains the computed Core Plus abstractions and a text file with the counts of different core-plus patterns.Folder: Pseudoknot_MotifsThis folder contains the data used for the experiment on 332 RNA pseudoknots from the Pseudobase++ database.Molecules in dot-bracket notationSubfolder Molecules_DBN/Pseudoknot_H/ Contains the secondary structures of the 253 RNAs with H-type pseudoknots.Subfolder Molecules_DBN/Pseudoknot_HLout/ Contains the secondary structures of the 64 RNAs with HL_out-type pseudoknots.Subfolder Molecules_DBN/Pseudoknot_HLin/ Contains the secondary structures of the 4 RNAs with HL_in-type pseudoknots.Subfolder Molecules_DBN/Pseudoknot_LL/ Contains the secondary structures of the 11 RNAs with LL-type pseudoknots.Computed abstractionsSubfolder Molecules_Abstractions_DBN/Shape/ Contains the computed Shape abstractions and a text file with the counts of different shapes for each pseudoknot type (H, HL_out, HL_in, LL).Subfolder Molecules_Abstractions_DBN/Core/ Contains the computed Core abstractions and a text file with the counts of different cores for each pseudoknot type (H, HL_out, HL_in, LL).Subfolder Molecules_Abstractions_DBN/Core_Plus/ Contains the computed Core Plus abstractions and a text file with the counts of different core-plus patterns for each pseudoknot type (H, HL_out, HL_in, LL).

提供机构：

Merelli, Emanuela; Tesei, Luca; Quadrini, Michela

创建时间：

2025-10-22