20 Nematode Proteomes

Data for PhD thesis on "Next-generation Nematode Genomes" Sujai Kumar This tgz file has 20 Nematode protein fasta files used in Chapter 3 "Annotating nematode genomes" The original files were obtained from WormBase (WS230), http://nematod.es, and www.inra.fr/meloidogyne_incognita/genomic_resources The fasta files have been cleaned up: a) all whitespace converted to spaces in sequence headers (otherwise NCBI's makeblastdb fails) b) multi-line sequences have been converted to single line c) sequence IDs have been prefixed with a species abbreviation: Caenorhabditis elegans (ce) Caenorhabditis briggsae (cbg) Caenorhabditis sp. 5 (csp5) Caenorhabditis remanei (cr) Caenorhabditis brenneri (cbn) Caenorhabditis sp. 11 (csp11) Caenorhabditis japonica (cj) Caenorhabditis angaria (ca) Pristionchus pacificus (pp) Strongyloides ratti (sr) Bursaphelenchus xylophilus (bx) Meloidogyne hapla (mh) Meloidogyne incognita (mi) Meloidogyne floridensis (mf) Ascaris suum (as) Brugia malayi (bm) Litomosoides sigmodontis (ls) Acanthocheilonema viteae (av) Dirofilaria immitis (di) Trichinella spiralis (ts)