Nuphar_ABC_Arrigo2016

This folder contains: - SSR/ = empirical SSR dataset - data/ = ini files, hard coded - Qoutputs/ = quantinemo outputs - Qparams/ = quantinemo parameter files - Qstats/ = final summary stats - scripts/ = all needed scripts, look at README.jpg to get an idea how how the pipeline works - quantinemo = QuantiNemo V 1.6.0 (unreleased), can be downloaded at http://www.unil.ch/popgen/softwares/quantinemo/blaser_et_al_evolution.zip otherwise, contact Samuel Neuenschwander for getting a copy. Note that the pipeline must be started from scripts/ using the following command: perl ABC_loader.pl ncores nmax -ncore = number of parallel instances of quantiNemo you want to run -nmax = launch jobs until reaching nmax CPU load Dependencies: ## Linux OS, Ubuntu 10.04 ## Perl v5.10.1 threads; threads::shared; File::Basename; List::Util qw(shuffle); ## R >= 3.0.0 e1071 ## QuantiNemo: V 1.6.0