SmallMammalsCooccur

Corresponding publication:Costa, A. P. L., Winck, G. R., Teixeira, B. R., Gentile, R., Vieira, E. M., Pardini, R., Püttker, T., D’Andrea, P. S. and C. S. Andreazzi. 2023. Ecological interactions without co-occurrence are not evidence of spillover risk: Predicting the impact of landscape conversion on small mammal occurrence and the transmission of parasites in the Atlantic Forest. Under submissionData LocationsGeographic locations of data collection: Brazilian Atlantic Forest (see publication for more details)Methodological InformationMethods of data collection/generation: see manuscript for detailsThe authors respectfully request to be contacted by researchers interested in the raw data of small mammal occurrences.Contact InformationName: Ana Paula Lula CostaAffiliation: Laboratório de Biologia e Parasitologia de Mamíferos Silvestres Reservatórios, Instituto Oswaldo Cruz, Fiocruz, Rio de Janeiro, RJ, Brazil.ORCID ID: https://orcid.org/0000-0003-4854-160XEmail: [e-mail] and Data overviewCodeAll analyses were made in R.Script for network analysesCosta.2023-Hmsc_CentralHosts.RScript for constructing Hmsc model and analyzing its parametersCosta.2023-Hmsc_Cooccur.RDataSmall mammal occurrence matrixcom.f_pa.csvcoordinates of each landscape used as sample sites for small mammal communitiesbuffer_id.csvLandscape metrics calculated for each sample siteland.feat.na.e.csvSmall mammal species traitsTrData2.csvSmall mammal phylogenetic treeSmallmammals_maxlike_nf.nwkModule clustering and categorization of small mammal species based on their centrality valuesNet_metrics.csvcentral_res.csv