Datasets and Pipeline V1.0 from An Atlas of Plant Transposable Elements

In this repository, we deposited support data for the article "An Atlas of Plant Transposable Elements", available at http://apte.cp.utfpr.edu.br/.

Here, we included:

1.) Supplementary material data:
A) SuppMat_1.xlsx: The genome assembly reference access from Ensembl Plants species used.
B) SuppMat_2.docx: A brief transposable elements annotation steps are used in this work.

2.) Code and software: all script code create, third-party software, how we are used it, are detailed using Arabidopsis thaliana genome as an example in the GitHub: https://github.com/alerpaschoal/apte_pipeline under the MIT license (please see details in licence.txt file). For the third part-software, consult their terms.

To report bugs, to ask for help, and to give any feedback, please contact Alexandre R. Paschoal ([e-mail]) or Douglas S. Domingues ([e-mail]).