Neisseria core genome alignment and phylogeny
收藏NIAID Data Ecosystem2026-03-10 收录
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资源简介：
All publicly available genomes from the Neisseria genus were downloaded from NCBI (as of December 30, 2017) and annotated with Prokka v 1.12. N. gonorrhoeae and N. meningitidis were subsampled to 20 genomes. Core genes (n = 236) were identified and aligned with Roary v 3.12.0. Approximate maximum likelihood phylogenetic analysis was performed used FastTree v 2.1.9. The phylogeny was visualized using FigTree (http://tree.bio.ed.ac.uk/software/figtree/). Branches are scaled by substitutions per site.
创建时间：
2018-02-12
