R script and input datasets

See materials and methods section of Klass et al. 2025 (Species diversity and within-host tropism for mixed equine strongyle infections using a cytochrome c oxidase subunit I metabarcoding approach.) for description.These scripts show calculations and visualisations for data reported in the publication. The input data provided here can be reproduced by running the snakemake workflow provided under: https://doi.org/10.6084/m9.figshare.29099111