Additional file 5 of Targeted enrichment of novel chloroplast-based probes reveals a large-scale phylogeny of 412 bamboos

Additional file 5: Supplementary Table S1. 3654 species used in probe design. Supplementary Table S2. The table of 568 representative species ID. Supplementary Table S3. Evaluation of designed probe. Supplementary Table S4. The bamboo species in this study. Supplementary Table S5. The table of bamboo plastid sequences from NCBI. Supplementary Table S6. The species used for species tree construction. Supplementary Table S7. Coverage and depth analysis of pan-CpGenome. Supplementary Table S8. Align the probes to 468 complete chloroplast genomes, which did not contain the sequences used to design the probes. Supplementary Table S9. The statistics of assembled plastid sequences after redundancy removing. Supplementary Table S10. Evaluation for target enrichment and assemblies.