Additional file 17: of Erratum to: Chronic cocaine-regulated epigenomic changes in mouse nucleus accumbens

Table S7. Genome-wide association between chromatin modification and transcriptional change. Based on the chromatin modification at each genomic region, transcripts are separated into up-regulated, down- regulated, and non-significant (Additional file 7). The chromatin-up and -down transcripts are correlated with transcripts that show expression change using Fisherâ s exact test. This generates four combinations ('s' = chromatin modification, 'e' = expression change): s.up.e.up; s.up.e.down; s.down.e.up; s.down.e.down. The P-values were adjusted using the BH [78] method and a FDR cutoff of <10% was used to select mark-region combinations. The analysis was first done with the enhancer regions included and then repeated with the enhancers removed. (XLSX 18 kb)