Greengenes2 training data formatted for DADA2 (Greengenes2 release version 2024.09)
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https://zenodo.org/record/14169077
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资源简介：
These DADA2-formatted training fasta files were derived from the Greengenes2 version 2024.09 release. https://ftp.microbio.me/greengenes_release/2024.09/
These fastas were generated by the following commands (using the dada2 R package version 1.35.4):
path <- "~/tax/GG2/2024_09"fn <- file.path(path, "5b42d9b6-2f24-4f01-b989-9b4dafca7d5e/data/dna-sequences.fasta")txfn <- file.path(path, "b7c3e691-ea51-4547-94dd-f79f49e41a36/data/taxonomy.tsv")
fn.out.gg <- "~/Desktop/gg2_2024_09_toGenus_trainset.fa.gz"dada2:::makeTaxonomyFasta_GG2(fn, txfn, fn.out.gg, include.species=FALSE, compress=TRUE)
fn.out.spc.gg <- "~/Desktop/gg2_2024_09_toSpecies_trainset.fa.gz"dada2:::makeTaxonomyFasta_GG2(fn, txfn, fn.out.spc.gg, include.species=TRUE, compress=TRUE)
创建时间：
2024-11-15
