Phylogenomics of NCLDV

25 files, including single gene alignments raw and filtered, concatenated gene alignments raw and filtered, and phylogenomic tree files Single-gene alignments (untrimmed) for phylogenomic analysisDataset by Elisabeth HehenbergerSingle-gene alignments for 10 proteins in fasta format. Alignments were manually curated (removal of highly divergent and/or paralogous sequences, merging of sequence fragments) based on single-gene phylogenies. Merged sequences are indicated in the sequence name. Final alignments were performed with the MAFFT L-INS-i algorithm.File name convention:OG numbers stand for the orthogroups recovered in this studyNCVOG numbers stand for the orthogroups recovered in:N. Yutin, Y. I. Wolf, D. Raoult, E. V Koonin, Eukaryotic large nucleo-cytoplasmic DNA viruses: Clusters of orthologous genes and reconstruction of viral genome evolution. Virol J. 6, 223 (2009).Sequence name convention:Virus name; GenBank accession(except for the ChoanoV sequences)Single-gene alignments (trimmed) for phylogenomic analysisDatasetmodified on 21.07.2018, 15:20 by Elisabeth HehenbergerTrimmed single-gene alignments for 10 proteins as used for concatenation in fasta format. Trimming was performed with BMGE using the default gap threshold and the BLOSUM30 similarity matrix.File name convention:OG numbers stand for the orthogroups recovered in this studyNCVOG numbers stand for the orthogroups recovered in:N. Yutin, Y. I. Wolf, D. Raoult, E. V Koonin, Eukaryotic large nucleo-cytoplasmic DNA viruses: Clusters of orthologous genes and reconstruction of viral genome evolution. Virol J. 6, 223 (2009).Sequence name convention:Virus name; GenBank accession(except for the ChoanoV seqeunces)Concatenated alignments for phylogenomic analysisDatasetmodified on 21.07.2018, 16:50 by Elisabeth HehenbergerConcatenated alignments underlying phylogenomic trees.A README file contains details concerning the individual files. Phylogenomic trees in newick formatDataset by Elisabeth HehenbergerPhylogenomic reconstructions in newick format. All phylogenomic trees described in the publication can be found in newick format in this file, including a detailed description for each tree.