Supplementary Table S2 from Integrative Bulk and Single-Cell Profiling of Premanufacture T-cell Populations Reveals Factors Mediating Long-Term Persistence of CAR T-cell Therapy

Supplementary Table S2. Differentially expressed genes between T-cell subtypes and clinical CAR T-cell persistence groups. Differential expression analysis was performed on RNA-Seq data with Limma. The first sheet contains genes ranked by p-value from the ANOVA model with the null hypothesis of equal expression across the five T-cell subsets. Subsequent sheets show the output of a mixed effects model including T-cell subtype and clinical CAR Tcell persistence group. Sheets 2-10 consist of comparisons between T-cell subsets, and sheets 11- 19 consist of comparisons between patients with long ({greater than or equal to} 6 month) vs short (