Abundance

Abundance: A Kraken 2 report provides information of the bacterial taxa in each sample.<br>Kindom, Phylum, Class, Order, Family, Genus: Each column contains name of taxonomic classification of each sampleColorOrder: Numeric data representing the order that each taxa was plotted in our manuscript.<br>HexColor: Color code in hex format for each taxa395 columns using sample names as column names: Numeric data as the relative abundance of each sample. Every column should sum to 1.<br>NOTE: 1. The (U)nclassified reads from kraken2 are not included in the calculation.2. The sample names of those columns are modified to be compatible with the format requirement in matlab. To convert the names back to match the SampleID in the rest of the files, 's' at the beginning of each column name should be removed, and underscore ('_') needs to be converted to period (eg. 'sFMT_0001A' will become 'FMT.0001A').