Association results for the SCZ cases and control samples.

Analyses are presented for both the allelic regression and the genotypic regression for which the genotypes were recoded under an additive genotypic model; age, sex and country/study were used as covariates. The German sample consists of 484 cases and 1300 controls. The Scandinavian SCOPE (Scandinavian Collaboration on Psychiatric Etiology) sample (Scand.) consists of 641 cases and 1086 controls and was created by merging the Danish and Norwegian samples, which were shown previously to be similar [32], [41]. The 15 markers that were typed or extracted in the 2 samples are presented (1125 cases and 2386 controls); see Tables S2 and S3 for results from all markers in each sample. In Tables 2, 3, 4, and 5, the position (hg18, NCBI36) of each marker is given below its rsID, the minor alleles and their frequencies in cases and controls are given, together with the odds ratio, the 95% confidence interval and the genotype success (call rate).
*indicates significant P-values (<0.05).