Sample metadata including WTD demographics, date of collection, cause of death, county of death, and sequence accession.

Negative is abbreviated as neg, and positive is abbreviated as pos. n1_average_ct and n2_average_ct are the average Ct across the two replicates if they were both positive. n1_half_positive and n2_half_positive are the Ct values for samples where one of the two replicates yielded a detectable Ct. Samples were only declared positive if three of four tests were positive. hict_lineage is the lineage as called by the nested RBD sequencing approach. Values in hict_lineage will either be the lineage called or the step at which the nested RBD sequencing approach failed. hict_length is the number of nucleotides recovered from the nested RBD sequencing. wgs_lineage is the lineage called from whole genome sequencing attempt. wgs_percent_5x_coverage is the percent of the SARS-CoV-2 genome that had 5x coverage or greater for whole genome sequencing. wgs_VSP is the viral specimen accession assigned to the sequence data. seq_variant is the variant call from whole genome sequencing. seq_cluster is the designated phylogenetic cluster to which the sequence belonged. ncbi_accession is the GenBank accession that can be used to download the sequence. gisaid_accession is the GISAID accession that can be used to download the sequence. Isolate is the isolate name for uploading the sequence. CWD is the chronic wasting disease status for the deer as either positive (pos) or negative (neg). CWDLabel1 is the accession for the CWD test. IncidentDate is the date that the animal was initially collected. Age is the age of the WTD sampled. Gender specifies male or female for the WTD. CountyValue specified the county that the sample was collected in. Region specifies the region that the sample was collected in using cardinal directions within the state of Pennsylvania. Latitude and Longitude specify the coordinates that the sample was found. Animalstatus specifies the reported cause of death for the WTD. (CSV)