Additional file 2 of Cellular clarity: a logistic regression approach to identify root epidermal regulators of iron deficiency response

Additional file 2: Table 01. List of 2,893 differentially expressed genes identified in whole root data. Table 02. List of 2,739 differentially expressed genes identified using epidermis specific RNA-seq data with controls at all time points. Fields included are AGI, Alias(es), Cluster number, and a flag indicating whether the gene was differentially expressed at 6, 12, 18, 24, 30 or 36 hours. Table 03. List of 337 motifs identified using AME (65) with the DAP-seq (66) database. Table 04. List of 29 Consistent transcription factors identified in 20 runs of logistic regression with LASSO. Name, AGI and GO terms identified on arabidopsis.org (TAIR) are provided. Table 05. List of putative targets associated with each of the 29 consistent transcription factors. List includes the name of transcription factor, AGI of target, flag indicating whether target is 1) a known iron gene and/or 2) a transcription factor. Table 06. GO terms enriched in the group of targets associated with each of 29 consistent transcription factors. Table 07. Subset of GO terms from Supplementary Table 03 that include reference to "iron". GO ID, GO term, adjusted p-value and transcription factor name or AGI provided. Table 08. Subset of GO terms from Supplementary Table 03 that include reference to "root". GO ID, GO term, adjusted p-value and transcription factor name or AGI provided. Table 09. Subset of GO terms from Supplementary Table 03 that include reference to "epidermis". GO ID, GO term, adjusted p-value and transcription factor name or AGI provided.