PPI prediction from sequence, gold standard dataset

Gold Standard Dataset for sequence-based PPI prediction:Big dataset: 163,192 training points (Intra-1), 59,260 validation points (Intra-0), 52,048 test points (Intra-2)) + corresponding protein sequences from SwissprotNo direct data leakage: proteins from training are not contained in validation or test, proteins from validation are not in training or test, proteins from test are not in validation or trainingMinimized sequence similarity between training, validation, test because whole human proteome was split with KaHIP such that sequence similarities are minimized w.r.t. length-normalized bitscoresRedundancy-reduction with CD-HIT: inside of the datasets, no proteins with >40% pairwise sequence similarityNew version: added sequence of Q96PU5 to the human_swissprot_oneliner