Dec2021 reference datasets for Mitohelper
收藏Zenodo2025-03-14 更新2026-05-25 收录
下载链接:
https://zenodo.org/record/5748588
下载链接
链接失效反馈官方服务:
资源简介:
<strong>Reference datasets (Dec 2021 update) for Mitohelper (<em>https://github.com/aomlomics/mitohelper</em>)</strong> Mitohelper is a repository built to facilitate experimental design, alignment visualization, and reference sequence analysis in fish eDNA studies. Refer to our paper and Mitohelper's wiki for database construction pipeline. I. Reference database files in tab-separated format, containing gene, taxonomy, and sequence information: mitofish.all.Dec2021.tsv (724,918 records) mitofish.12S.Dec2021.tsv (39,085 records; added new keyword "genome assembly") mitofish.COI.Dec2021.tsv (249,538 records; added new keyword "genome assembly") II. De-replicated QIIME 2-compatible 12S/12S+16S+18S rRNA reference datasets: 12S-seqs-derep-uniq.qza 12S-tax-derep-uniq.qza 12S-16S-18S-seqs.qza 12S-16S-18S-tax.qza If you use Mitohelper, please cite:<br> Jean Lim, S, Thompson, LR. Mitohelper: A mitochondrial reference sequence analysis tool for fish eDNA studies. Environmental DNA. 2021; 00: 1– 10. https://doi.org/10.1002/edn3.187
提供机构:
Zenodo创建时间:
2021-12-02



