Campylobacter_Subsystems_DESeq_results. This Excel spreadsheet contains the differential expression by SEED Subsystems hierarchies between ICD and control samples for Campylobacter-specific transcript
Unpaired read counts for each microbial pangene and each Uniref90 cluster, together with taxonomic labels from kraken2. These files were the outputs of the pipeline: https://github.com/Chiamh/meta-omi
Input datafiles for running analyses on case-control microbiome datasets (from Almeida et al. 2019; DOI: 10.1038/s41586-019-0965-1), which are presented as validations in the POMS manuscript. Inc