Training data for 'Genome annotation with Funannotate' tutorial (Galaxy Training Material)
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https://zenodo.org/record/5653162
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资源简介：
The data provided here are part of a Galaxy Training Network tutorial for genome annotation with funannotate.
Genome was assembled following the GTN Flye assembly tutorial, then masked with RepeatMasker.
RNASeq data: SRR8534859 reads were mapped to the genome using STAR (toolshed.g2.bx.psu.edu/repos/iuc/rgrnastar/rna_star/2.7.8a+galaxy0), then the bam was downsampled (10% with toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_DownsampleSam/2.18.2.1) to reduce the size of the dataset. Fastq files were then extracted from the resulting bam file (toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_SamToFastq/2.18.2.1).
SwissProt_subset.fasta is a subset of SwissProt proteins that are known to have some similarity with the genome (found using Diamond against the genome, then extracting sequences matching with e-value < 0.0001).
创建时间：
2023-04-26
