Raw sequence reads of Hi-C experiment for pig pan-genome analysis. Sus scrofa

A pan-genome is a collection of all genomic information within a species. The sequences absent in references genomes(Sscrofa11.1) were identified as “pan-sequences”. Adjacent loci generally demonstrated frequent interaction , as determined by the high-throughput Hi-C analysis; this enabled us to anchor the pan-sequences to Sscrofa11.1 based on the mutual interactions. Here, we generated 12 Hi-C data from 10 individuals to anchor the pan-sequences to Sscrofa11.1 by inferring their special interactions with adjacent regions.