The emergence of metabolisms through Earth history and implications for biospheric evolution

Associated material for the PTRSB manuscript, entitled 'The emergence of metabolisms through Earth history and implications for biospheric evolution' from Moody et al. 2025.
File structure:
Dated_Nodes: This includes the merged dating results with the reconciliations
Dating_Results: Results from the molecular clock analyses
Genes_Taxonomy_Tree: This includes the alignments, concatenation and species tree files, along with ID files.
Metabolic_completeness_over_time: This includes the anvio estimations for the internal and external nodes across the species tree, line graphs for each of the metabolic modules over time, and also all the data used to generate them.
Timeslice_KEGGs: This includes the different time-slice metabolisms inferred via anvio for figure 1A.
Transfers: This includes the information used for the transfer and duplication analyses.