遇见数据集

<i>B. nonstop</i> annotated proteins

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DataCite Commons2023-10-02 更新2024-08-18 收录
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Protein sequences from <i>B. nonstop</i> were additionally annotated by blastp searches (with a cut-off <i>e</i>-value of 10<sup>-20</sup>) against protein datasets of a selection of kinetoplastids available from TriTrypDB (release 62) including <i>Angomonas deanei</i>, <i>Blechomonas ayalai</i>, <i>Bodo saltans</i>, <i>Crithidia fasciculata</i>, <i>Endotrypanum monterogeii</i>, <i>Leishmania major</i> Friedlin, <i>Leishmania martiniquensis</i>, <i>Leishmania mexicana</i>, <i>Leptomonas pyrrhocoris</i>, <i>Leptomonas seymouri</i>, <i>Paratrypanosoma confusum</i>, <i>Porcisia hertigi</i>, <i>Trypanosoma brucei</i> TREU927, <i>Trypanosoma cruzi</i> CL Brener Esmeraldo-like. Proteins not retrieving any hit were then screened (with a cut-off <i>e</i>-value of 10<sup>-5</sup>) against the Swiss-Prot database (downloaded February 10<sup>th</sup>, 2023) (Bairoch &amp; Apweiler 2000, Nucleic Acids Res). Protein domains were further annotated using InterProScan v5.55-88.0 (Jones <i>et al.</i> 2014, Bioinformatics) and the Pfam database (Finn et al. 2014, Nucleic Acid Res).

来自*B. nonstop*的蛋白质序列通过BLASTp搜索完成了额外注释,比对筛选阈值设置为E值(E-value)≤10⁻²⁰,比对数据库为从TriTrypDB数据库第62版获取的精选动质体生物蛋白数据集,涵盖*Angomonas deanei*、*Blechomonas ayalai*、*Bodo saltans*、*Crithidia fasciculata*、*Endotrypanum monterogeii*、*Leishmania major* Friedlin、*Leishmania martiniquensis*、*Leishmania mexicana*、*Leptomonas pyrrhocoris*、*Leptomonas seymouri*、*Paratrypanosoma confusum*、*Porcisia hertigi*、*Trypanosoma brucei* TREU927以及*Trypanosoma cruzi* CL Brener Esmeraldo-like等物种。对于未检索到任何同源比对结果的蛋白质,随后以E值≤10⁻⁵为阈值,针对Swiss-Prot数据库(2023年2月10日下载,Bairoch & Apweiler, 2000, *Nucleic Acids Research*)开展比对筛选。此外,使用InterProScan v5.55-88.0(Jones等, 2014, *Bioinformatics*)与Pfam数据库(Finn等, 2014, *Nucleic Acid Research*)对蛋白质结构域进行了进一步注释。

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figshare
创建时间:
2023-08-31
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